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nextflow clone

Clone a remote project into a folder.

Usage​

$ nextflow clone [options] [project]

Description​

The clone command downloads a pipeline from a Git-hosting platform into the current directory and modifies it accordingly. To download a pipeline into the global cache ~/.nextflow/assets, use the nextflow pull command.

Options​

-d, -deep​

Create a shallow clone of the specified depth.

-h, -help​

Print the command usage.

-hub (github)​

Service hub where the project is hosted. Options: gitlab or bitbucket.

-r (master)​

Revision to clone. Can be a git branch, tag, or commit SHA number.

-user​

Private repository user name.

Examples​

Clone the latest revision of a pipeline:

$ nextflow clone nextflow-io/hello
nextflow-io/hello cloned to: hello

Clone a specific revision of a pipeline:

$ nextflow clone nextflow-io/hello -r v1.1
nextflow-io/hello cloned to: hello
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